Research output per year
Research output per year
- 50 results
Search results
-
2022
Diversity of synaptic protein complexes as a function of the abundance of their constituent proteins: A modeling approach
Miski, M., Keömley-Horváth, B. M., Megyeriné, D. R., Csikász-Nagy, A. & Gáspári, Z., Jan 2022, In: PLoS Computational Biology. 18, 1, e1009758.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Microsimulation based quantitative analysis of COVID-19 management strategies
Reguly, I. Z., Csercsik, D., Juhász, J., Tornai, K., Bujtár, Z., Horváth, G., Keömley-Horváth, B., Kós, T., Cserey, G., Iván, K., Pongor, S., Szederkényi, G., Röst, G. & Csikász-Nagy, A., Jan 2022, In: PLoS Computational Biology. 18, 1, e1009693.Research output: Contribution to journal › Article › peer-review
Open Access20 Citations (Scopus) -
2021
Evolution of opposing regulatory interactions underlies the emergence of eukaryotic cell cycle checkpoints
Hernansaiz-Ballesteros, R. D., Földi, C., Cardelli, L., Nagy, L. G. & Csikász-Nagy, A., Dec 2021, In: Scientific Reports. 11, 1, 11122.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
Systematic analysis of noise reduction properties of coupled and isolated feedforward loops
Chakravarty, S. & Csikász-Nagy, A., Dec 2021, In: PLoS Computational Biology. 17, 12, e1009622.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
2020
Combining data integration and molecular dynamics for target identification in α-synuclein-aggregating neurodegenerative diseases: Structural insights on Synaptojanin-1 (Synj1)
Mateeva, T., Rosta, E., Csikasz-Nagy, A. & Jenkins, K., 2020, In: Journal of Computational and Structural Biotechnology. 18, p. 1032-1042 11 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)133 Downloads (Pure) -
Comparative analysis of the intracellular responses to disease-related aggregation-prone proteins
Melnik, A., Cappelletti, V., Vaggi, F., Piazza, I., Tognetti, M., Schwarz, C., Cereghetti, G., Ahmed, M. A., Soste, M., Matlack, K., de Souza, N., Csikasz-Nagy, A. & Picotti, P., 15 Aug 2020, In: Journal Of Proteomics. 225, 103862.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Coupled membrane transporters reduce noise
Cardelli, L., Laurenti, L. & Csikasz-Nagy, A., 27 Jan 2020, In: PHYSICAL REVIEW E. 101, 1, 012414.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
Information Cascades and the Collapse of Cooperation
Yang, G., Csikász-Nagy, A., Waites, W., Xiao, G. & Cavaliere, M., 1 Dec 2020, In: Scientific Reports. 10, 1, 8004.Research output: Contribution to journal › Article › peer-review
Open Access7 Citations (Scopus) -
Interpretation of morphogen gradients by a synthetic bistable circuit
Grant, P. K., Szep, G., Patange, O., Halatek, J., Coppard, V., Csikász-Nagy, A., Haseloff, J., Locke, J. C. W., Dalchau, N. & Phillips, A., 1 Dec 2020, In: Nature Communications. 11, 1, 5545.Research output: Contribution to journal › Article › peer-review
Open Access16 Citations (Scopus) -
Unifying the mechanism of mitotic exit control in a spatiotemporal logical model
Howell, R. S. M., Klemm, C., Thorpe, P. H. & Csikasz-Nagy, A., 12 Nov 2020, In: PLoS Biology. 18, 11, e3000917.Research output: Contribution to journal › Article › peer-review
Open Access7 Citations (Scopus) -
2019
Competition in the chaperone-client network subordinates cell-cycle entry to growth and stress
Moreno, D. F., Parisi, E., Yahya, G., Vaggi, F., Csikász-Nagy, A. & Aldea, M., 15 Apr 2019, In: Life Science Alliance. 2, 2, e201800277.Research output: Contribution to journal › Article › peer-review
Open AccessFile11 Citations (Scopus)112 Downloads (Pure) -
Proteostasis collapse, a hallmark of aging, hinders the chaperone-Start network and arrests cells in G1
Moreno, D. F., Jenkins, K., Morlot, S., Charvin, G., Csikasz-Nagy, A. & Aldea, M., 13 Sept 2019, In: eLife. 8, e48240.Research output: Contribution to journal › Article › peer-review
Open AccessFile21 Citations (Scopus)106 Downloads (Pure) -
Synthetic Physical Interactions with the Yeast Centrosome
Howell, R. S. M., Csikász-Nagy, A. & Thorpe, P. H., 9 Jul 2019, In: G3 (Bethesda, Md.). 9, 7, p. 2183-2194 12 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Citations (Scopus) -
2018
Computing with biological switches and clocks
Dalchau, N., Szép, G., Hernansaiz-Ballesteros, R., Barnes, C. P., Cardelli, L., Phillips, A. & Csikász-Nagy, A., 1 Dec 2018, In: Natural Computing. 17, 4, p. 761-779 19 p.Research output: Contribution to journal › Article › peer-review
Open Access36 Citations (Scopus) -
Context-dependent prediction of protein complexes by SiComPre
Rizzetto, S., Moyseos, P., Baldacci, B., Priami, C. & Csikász-Nagy, A., 1 Dec 2018, In: npj Systems Biology and Applications. 4, 1, 37.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
Molecular Filters for Noise Reduction
Laurenti, L., Csikasz-Nagy, A., Kwiatkowska, M. & Cardelli, L., 19 Jun 2018, (E-pub ahead of print) In: Biophysical Journal. 114, 12, p. 3000-3011 12 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile16 Citations (Scopus)176 Downloads (Pure) -
Single molecules can operate as primitive biological sensors, switches and oscillators
Hernansaiz-Ballesteros, R. D., Cardelli, L. & Csikász-Nagy, A., 18 Jun 2018, In: Bmc Systems Biology. 12, 1, 70.Research output: Contribution to journal › Article › peer-review
Open Access8 Citations (Scopus) -
2017
Efficient Switches in Biology and Computer Science
Cardelli, L., Hernansaiz-Ballesteros, R. D., Dalchau, N. & Csikász-Nagy, A., 5 Jan 2017, In: PL o S Computational Biology. 13, 1, e1005100.Research output: Contribution to journal › Article › peer-review
Open AccessFile12 Citations (Scopus)191 Downloads (Pure) -
2016
Noise Reduction in Complex Biological Switches
Cardelli, L., Csikász-Nagy, A., Dalchau, N., Tribastone, M. & Tschaikowski, M., 8 Feb 2016, (E-pub ahead of print) In: Scientific Reports. 6, 20214.Research output: Contribution to journal › Article › peer-review
Open AccessFile28 Citations (Scopus)148 Downloads (Pure) -
Role of Computational Modeling in Understanding Cell Cycle Oscillators
Csikász-Nagy, A. & Mura, I., 2016, In: Methods in molecular biology (Clifton, N.J.). 1342, p. 59-70 12 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
The effects of an editor serving as one of the reviewers during the peer-review process [version 1; referees: 1 approved, 2 approved with reservations]
Giordan, M., Csikasz-Nagy, A., Collings, A. M. & Vaggi, F., 2016, In: F1000Research. 5, 683.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
2015
Hsp12p and PAU genes are involved in ecological interactions between natural yeast strains
Rivero, D., Berná, L., Stefanini, I., Baruffini, E., Bergerat, A., Csikász-Nagy, A., De Filippo, C. & Cavalieri, D., Aug 2015, In: ENVIRONMENTAL MICROBIOLOGY. 17, 8, p. 3069-81 13 p.Research output: Contribution to journal › Article › peer-review
22 Citations (Scopus) -
Models of breast morphogenesis based on localization of stem cells in the developing mammary lobule
Honeth, G., Schiavinotto, T., Vaggi, F., Marlow, R., Kanno, T., Shinomiya, I., Lombardi, S., Buchupalli, B., Graham, R., Gazinska, P., Ramalingam, V., Burchell, J., Purushotham, A. D., Pinder, S. E., Csikasz-Nagy, A. & Dontu, G., 14 Apr 2015, In: Stem Cell Reports. 4, 4, p. 699-711 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile32 Citations (Scopus)222 Downloads (Pure) -
Module-based construction of plasmids for chromosomal integration of the fission yeast Schizosaccharomyces pombe
Kakui, Y., Sunaga, T., Arai, K., Dodgson, J., Ji, L., Csikász-Nagy, A., Carazo-Salas, R. & Sato, M., Jun 2015, In: Open Biology. 5, 6, p. 150054 18 p.Research output: Contribution to journal › Article › peer-review
19 Citations (Scopus) -
Qualitative and Quantitative Protein Complex Prediction Through Proteome-Wide Simulations
Rizzetto, S., Priami, C. & Csikász-Nagy, A., 22 Oct 2015, In: PL o S Computational Biology. 11, 10, p. e1004424 16 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile10 Citations (Scopus)168 Downloads (Pure) -
2014
A network approach to mixing delegates at meetings
Vaggi, F., Schiavinotto, T., Lawson, J. L., Chessel, A., Dodgson, J., Geymonat, M., Sato, M., Carazo Salas, R. E. & Csikász-Nagy, A., 4 Feb 2014, In: eLife. 3, N/A, p. N/A 6 p., e02273.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
An insulin-to-insulin regulatory network orchestrates phenotypic specificity in development and physiology
Fernandes de Abreu, D., Caballero Reyes, A., Fardel, P., Stroustrup, N., Chen, Z., Lee, K., Keyes, W. D., Nash, Z. M., López-Moyado, I. F., Vaggi, F., Cornils, A., Regenass, M., Neagu, A., Ostojic, I., Liu, M., Cho, Y., Sifoglu, D., Shen, Y., Fontana, W. & Lu, H. & 8 others, , Mar 2014, In: PL o S Genetics. 10, 3, 15 p., e1004225.Research output: Contribution to journal › Article › peer-review
Open AccessFile70 Citations (Scopus)92 Downloads (Pure) -
Circadian rhythms synchronize mitosis in Neurospora crassa
Hong, C. I., Zámborszky, J., Baek, M., Labiscsak, L., Ju, K., Lee, H., Larrondo, L. F., Goity, A., Chong, H. S., Belden, W. J. & Csikász-Nagy, A., 28 Jan 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 4, p. 1397-1402 6 p.Research output: Contribution to journal › Article › peer-review
47 Citations (Scopus) -
Neurospora crassa as a model organism to explore the interconnected network of the cell cycle and the circadian clock
Zámborszky, J., Csikász-Nagy, A. & Hong, C. I., Oct 2014, In: Fungal Genetics and Biology. 71, p. 52-57 6 p.Research output: Contribution to journal › Article › peer-review
7 Citations (Scopus) -
2013
Cooperation and competition in the dynamics of tissue architecture during homeostasis and tumorigenesis
Csikász-Nagy, A., Escudero, L. M., Guillaud, M., Sedwards, S., Baum, B. & Cavaliere, M., Aug 2013, In: Seminars in Cancer Biology. 23, 4, p. 293-298 6 p.Research output: Contribution to journal › Article › peer-review
16 Citations (Scopus) -
Dynamics of SIN Asymmetry Establishment
Bajpai, A., Feoktistova, A., Chen, J.-S., McCollum, D., Sato, M., Carazo-Salas, R. E., Gould, K. L. & Csikasz-Nagy, A., 11 Jul 2013, In: PL o S Computational Biology. 9, 7, p. N/A 11 p., e1003147.Research output: Contribution to journal › Article › peer-review
Open Access10 Citations (Scopus) -
In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae
Amara, F., Colombo, R., Cazzaniga, P., Pescini, D., Csikász-Nagy, A., Falconi, M. M., Besozzi, D. & Plevani, P., 2013, In: Bmc Systems Biology. 7, p. 24Research output: Contribution to journal › Article › peer-review
5 Citations (Scopus) -
Spatial segregation of polarity factors into distinct cortical clusters is required for cell polarity control
Dodgson, J., Chessel, A., Yamamoto, M., Vaggi, F., Cox, S., Rosten, E., Albrecht, D., Geymonat, M., Csikasz-Nagy, A., Sato, M. & Carazo-Salas, R. E., 2013, In: Nature Communications. 4, 1834.Research output: Contribution to journal › Article › peer-review
38 Citations (Scopus) -
2012
Linkers of Cell Polarity and Cell Cycle Regulation in the Fission Yeast Protein Interaction Network
Vaggi, F., Dodgson, J., Bajpai, A., Chessel, A., Jordan, F., Sato, M., Carazo-Salas, R. E. & Csikasz-Nagy, A., 18 Oct 2012, In: PL o S Computational Biology. 8, 10, 13 p., e1002732.Research output: Contribution to journal › Article › peer-review
11 Citations (Scopus) -
Prosperity is associated with instability in dynamical networks
Cavaliere, M., Sedwards, S., Tarnita, C. E., Nowak, M. A. & Csikasz-Nagy, A., 21 Apr 2012, In: Journal of Theoretical Biology. 299, p. 126-138 13 p.Research output: Contribution to journal › Article › peer-review
53 Citations (Scopus) -
The Cell Cycle Switch Computes Approximate Majority
Cardelli, L. & Csikasz-Nagy, A., 13 Sept 2012, In: Scientific Reports. 2, p. - 9 p., 656.Research output: Contribution to journal › Article › peer-review
109 Citations (Scopus) -
The critical size is set at a single-cell level by growth rate to attain homeostasis and adaptation
Ferrezuelo, F., Colomina, N., Palmisano, A., Gari, E., Gallego, C., Csikasz-Nagy, A. & Aldea, M., Aug 2012, In: Nature Communications. 3, 8, 11 p., 1012.Research output: Contribution to journal › Article › peer-review
134 Citations (Scopus) -
Transcriptional Regulation Is a Major Controller of Cell Cycle Transition Dynamics
Romanel, A., Jensen, L. J., Cardelli, L. & Csikasz-Nagy, A., 6 Jan 2012, In: PLoS ONE. 7, 1, p. - 9 p., e29716.Research output: Contribution to journal › Article › peer-review
12 Citations (Scopus) -
2011
Overexpression limits of fission yeast cell-cycle regulators in vivo and in silico
Moriya, H., Chino, A., Kapuy, O., Csikasz-Nagy, A. & Novak, B., 6 Dec 2011, In: Molecular Systems Biology. 7, p. - 12 p., 556.Research output: Contribution to journal › Article › peer-review
14 Citations (Scopus) -
Response dynamics of phosphorelays suggest their potential utility in cell signalling
Csikasz-Nagy, A., Cardelli, L. & Soyer, O. S., Apr 2011, In: Journal Of The Royal Society Interface. 8, 57, p. 480-488 9 p.Research output: Contribution to journal › Article › peer-review
32 Citations (Scopus) -
2010
Restriction point control of the mammalian cell cycle via the cyclin E/Cdk2:p27 complex
Conradie, R., Bruggeman, F. J., Ciliberto, A., Csikasz-Nagy, A., Novak, B., Westerhoff, H. V. & Snoep, J. L., Jan 2010, In: FEBS Journal. 277, 2, p. 357-367 11 p.Research output: Contribution to journal › Article › peer-review
44 Citations (Scopus) -
Role of mRNA Gestation and Senescence in Noise Reduction during the Cell Cycle
Csikász-Nagy, A. & Mura, I., 2010, In: In Silico Biology. 10, 1-2, p. 81-88 8 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
2009
Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation
Csikasz-Nagy, A., Kapuy, O., Toth, A., Pal, C., Jensen, L. J., Uhlmann, F., Tyson, J. J. & Novak, B., Jan 2009, In: Molecular Systems Biology. 5, 1, 6 p., 236.Research output: Contribution to journal › Article › peer-review
42 Citations (Scopus) -
Minimum Criteria for DNA Damage-Induced Phase Advances in Circadian Rhythms
Hong, C. I., Zamborszky, J. & Csikasz-Nagy, A., May 2009, In: PL o S Computational Biology. 5, 5, p. - 7 p., e1000384.Research output: Contribution to journal › Article › peer-review
15 Citations (Scopus) -
Regulating the total level of a signaling protein can vary its dynamics in a range from switch like ultrasensitivity to adaptive responses
Soyer, O. S., Kuwahara, H. & Csikasz-Nagy, A., Jun 2009, In: FEBS Journal. 276, 12, p. 3290-3298 9 p.Research output: Contribution to journal › Article › peer-review
9 Citations (Scopus) -
Studying Irreversible Transitions in a Model of Cell Cycle Regulation
Ballarini, P., Mazza, T., Palmisano, A. & Csikasz-Nagy, A., 2009, In: Electronic Notes in Theoretical Computer Science. 232, p. 39 - 53 15 p.Research output: Contribution to journal › Article › peer-review
10 Citations (Scopus) -
2008
Adaptive dynamics with a single two-state protein
Csikasz-Nagy, A. & Soyer, O. S., 6 Aug 2008, In: Journal Of The Royal Society Interface. 5, S1, p. S41-S47 7 p.Research output: Contribution to journal › Article › peer-review
16 Citations (Scopus) -
Analysis of a Budding Yeast Cell Cycle Model Using the Shapes of Local Sensitivity Functions
Lovrics, A., Zsely, I. G., Csikasz-Nagy, A., Zador, J., Turanyi, T. & Novak, B., Nov 2008, In: INTERNATIONAL JOURNAL OF CHEMICAL KINETICS. 40, 11, p. 710-720 11 p.Research output: Contribution to journal › Article › peer-review
12 Citations (Scopus) -
Spatial controls for growth zone formation during the fission yeast cell cycle
Csikasz-Nagy, A., Gyorffy, B., Alt, W., Tyson, J. J. & Novak, B., Jan 2008, In: Yeast. 25, 1, p. 59-69 11 p.Research output: Contribution to journal › Article › peer-review
26 Citations (Scopus) -
Stochastic Petri Net extension of a yeast cell cycle model
Mura, I. & Csikasz-Nagy, A., 21 Oct 2008, In: Journal of Theoretical Biology. 254, 4, p. 850-860 11 p.Research output: Contribution to journal › Article › peer-review
51 Citations (Scopus)