Case study: data management strategies in an integrated pathway tool

Sabine Bernauer; David Croft; Paul Gardina; Eric Minch; Emanuele de Rinaldis; Ivayla Vatcheva

Case study: data management strategies in an integrated pathway tool

Sabine Bernauer, David Croft, Paul Gardina, Eric Minch, Emanuele de Rinaldis, Ivayla Vatcheva

Research output: Contribution to journal › Article › peer-review

Abstract

This paper describes the development strategies for an integrated tool to support scientists in the creative exploration of data relating to biochemical pathways. The multiple user groups, diverse functionalities, and many types and sources of data demanded a flexible yet coherent approach. This paper summarises the software requirements and the implied modules and functions, and focuses on the design decisions relevant to the representation, management and flow of data. Finally, several case studies in the use of the software are described and evaluated, and recommendations are made for future work.

Original language	English
Pages (from-to)	63-75
Number of pages	13
Journal	Appl Bioinformatics
Volume	3
Issue number	1
Publication status	Published - 2004

Keywords

Animals
Computer Simulation
Database Management Systems
Databases, Factual
Gene Expression Regulation
Humans
Information Storage and Retrieval
Models, Biological
Proteome
Signal Transduction
Software
Systems Integration

Cite this

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title = "Case study: data management strategies in an integrated pathway tool",

abstract = "This paper describes the development strategies for an integrated tool to support scientists in the creative exploration of data relating to biochemical pathways. The multiple user groups, diverse functionalities, and many types and sources of data demanded a flexible yet coherent approach. This paper summarises the software requirements and the implied modules and functions, and focuses on the design decisions relevant to the representation, management and flow of data. Finally, several case studies in the use of the software are described and evaluated, and recommendations are made for future work.",

keywords = "Animals, Computer Simulation, Database Management Systems, Databases, Factual, Gene Expression Regulation, Humans, Information Storage and Retrieval, Models, Biological, Proteome, Signal Transduction, Software, Systems Integration",

author = "Sabine Bernauer and David Croft and Paul Gardina and Eric Minch and {de Rinaldis}, Emanuele and Ivayla Vatcheva",

year = "2004",

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T2 - data management strategies in an integrated pathway tool

AU - Bernauer, Sabine

AU - Croft, David

AU - Gardina, Paul

AU - Minch, Eric

AU - de Rinaldis, Emanuele

AU - Vatcheva, Ivayla

PY - 2004

Y1 - 2004

N2 - This paper describes the development strategies for an integrated tool to support scientists in the creative exploration of data relating to biochemical pathways. The multiple user groups, diverse functionalities, and many types and sources of data demanded a flexible yet coherent approach. This paper summarises the software requirements and the implied modules and functions, and focuses on the design decisions relevant to the representation, management and flow of data. Finally, several case studies in the use of the software are described and evaluated, and recommendations are made for future work.

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KW - Animals

KW - Computer Simulation

KW - Database Management Systems

KW - Databases, Factual

KW - Gene Expression Regulation

KW - Humans

KW - Information Storage and Retrieval

KW - Models, Biological

KW - Proteome

KW - Signal Transduction

KW - Software

KW - Systems Integration

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SN - 1175-5636

VL - 3

SP - 63

EP - 75

JO - Appl Bioinformatics

JF - Appl Bioinformatics

IS - 1

ER -

Case study: data management strategies in an integrated pathway tool

Abstract

Keywords

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