Ensembl 2012

Paul Flicek; M Ridwan Amode; Daniel Barrell; Kathryn Beal; Simon Brent; Denise Carvalho-Silva; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Laurent Gil; Leo Gordon; Maurice Hendrix; Thibaut Hourlier; Nathan Johnson; Andreas K Kähäri; Damian Keefe; Stephen Keenan; Rhoda Kinsella; Monika Komorowska; Gautier Koscielny; Eugene Kulesha; Pontus Larsson; Ian Longden; William McLaren; Matthieu Muffato; Bert Overduin; Miguel Pignatelli; Bethan Pritchard; Harpreet Singh Riat; Graham R S Ritchie; Magali Ruffier; Michael Schuster; Daniel Sobral; Y Amy Tang; Kieron Taylor; Stephen Trevanion; Jana Vandrovcova; Simon White; Mark Wilson; Steven P Wilder; Bronwen L Aken; Ewan Birney; Fiona Cunningham; Ian Dunham; Richard Durbin; Xosé M Fernández-Suarez; Jennifer Harrow; Javier Herrero; Tim J P Hubbard; Anne Parker; Glenn Proctor; Giulietta Spudich; Jan Vogel; Andy Yates; Amonida Zadissa; Stephen M J Searle

doi:10.1093/nar/gkr991

Ensembl 2012

Paul Flicek, M Ridwan Amode, Daniel Barrell, Kathryn Beal, Simon Brent, Denise Carvalho-Silva, Peter Clapham, Guy Coates, Susan Fairley, Stephen Fitzgerald, Laurent Gil, Leo Gordon, Maurice Hendrix, Thibaut Hourlier, Nathan Johnson, Andreas K Kähäri, Damian Keefe, Stephen Keenan, Rhoda Kinsella, Monika KomorowskaGautier Koscielny, Eugene Kulesha, Pontus Larsson, Ian Longden, William McLaren, Matthieu Muffato, Bert Overduin, Miguel Pignatelli, Bethan Pritchard, Harpreet Singh Riat, Graham R S Ritchie, Magali Ruffier, Michael Schuster, Daniel Sobral, Y Amy Tang, Kieron Taylor, Stephen Trevanion, Jana Vandrovcova, Simon White, Mark Wilson, Steven P Wilder, Bronwen L Aken, Ewan Birney, Fiona Cunningham, Ian Dunham, Richard Durbin, Xosé M Fernández-Suarez, Jennifer Harrow, Javier Herrero, Tim J P Hubbard, Anne Parker, Glenn Proctor, Giulietta Spudich, Jan Vogel, Andy Yates, Amonida Zadissa, Stephen M J Searle

Medical & Molecular Genetics

European Molecular Biology Laboratory Cambridge

Research output: Contribution to journal › Article › peer-review

783 Citations (Scopus)

Abstract

The Ensembl project (http://www.ensembl.org) provides genome resources for chordate genomes with a particular focus on human genome data as well as data for key model organisms such as mouse, rat and zebrafish. Five additional species were added in the last year including gibbon (Nomascus leucogenys) and Tasmanian devil (Sarcophilus harrisii) bringing the total number of supported species to 61 as of Ensembl release 64 (September 2011). Of these, 55 species appear on the main Ensembl website and six species are provided on the Ensembl preview site (Pre!Ensembl; http://pre.ensembl.org) with preliminary support. The past year has also seen improvements across the project.

Original language	English
Article number	N/A
Pages (from-to)	D84-D90
Number of pages	7
Journal	Nucleic Acids Research
Volume	40
Issue number	D1 (Database Issue)
DOIs	https://doi.org/10.1093/nar/gkr991
Publication status	Published - Jan 2012

Keywords

Animals
Databases, Genetic
Gene Expression Regulation
Genetic Variation
Genomics
Humans
Mice
Molecular Sequence Annotation
Rats

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10.1093/nar/gkr991

Cite this

Flicek, P., Amode, M. R., Barrell, D., Beal, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fairley, S., Fitzgerald, S., Gil, L., Gordon, L., Hendrix, M., Hourlier, T., Johnson, N., Kähäri, A. K., Keefe, D., Keenan, S., Kinsella, R., ... Searle, S. M. J. (2012). Ensembl 2012. Nucleic Acids Research, 40(D1 (Database Issue)), D84-D90. Article N/A. https://doi.org/10.1093/nar/gkr991

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abstract = "The Ensembl project (http://www.ensembl.org) provides genome resources for chordate genomes with a particular focus on human genome data as well as data for key model organisms such as mouse, rat and zebrafish. Five additional species were added in the last year including gibbon (Nomascus leucogenys) and Tasmanian devil (Sarcophilus harrisii) bringing the total number of supported species to 61 as of Ensembl release 64 (September 2011). Of these, 55 species appear on the main Ensembl website and six species are provided on the Ensembl preview site (Pre!Ensembl; http://pre.ensembl.org) with preliminary support. The past year has also seen improvements across the project.",

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author = "Paul Flicek and Amode, {M Ridwan} and Daniel Barrell and Kathryn Beal and Simon Brent and Denise Carvalho-Silva and Peter Clapham and Guy Coates and Susan Fairley and Stephen Fitzgerald and Laurent Gil and Leo Gordon and Maurice Hendrix and Thibaut Hourlier and Nathan Johnson and K{\"a}h{\"a}ri, {Andreas K} and Damian Keefe and Stephen Keenan and Rhoda Kinsella and Monika Komorowska and Gautier Koscielny and Eugene Kulesha and Pontus Larsson and Ian Longden and William McLaren and Matthieu Muffato and Bert Overduin and Miguel Pignatelli and Bethan Pritchard and Riat, {Harpreet Singh} and Ritchie, {Graham R S} and Magali Ruffier and Michael Schuster and Daniel Sobral and Tang, {Y Amy} and Kieron Taylor and Stephen Trevanion and Jana Vandrovcova and Simon White and Mark Wilson and Wilder, {Steven P} and Aken, {Bronwen L} and Ewan Birney and Fiona Cunningham and Ian Dunham and Richard Durbin and Fern{\'a}ndez-Suarez, {Xos{\'e} M} and Jennifer Harrow and Javier Herrero and Hubbard, {Tim J P} and Anne Parker and Glenn Proctor and Giulietta Spudich and Jan Vogel and Andy Yates and Amonida Zadissa and Searle, {Stephen M J}",

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Flicek, P, Amode, MR, Barrell, D, Beal, K, Brent, S, Carvalho-Silva, D, Clapham, P, Coates, G, Fairley, S, Fitzgerald, S, Gil, L, Gordon, L, Hendrix, M, Hourlier, T, Johnson, N, Kähäri, AK, Keefe, D, Keenan, S, Kinsella, R, Komorowska, M, Koscielny, G, Kulesha, E, Larsson, P, Longden, I, McLaren, W, Muffato, M, Overduin, B, Pignatelli, M, Pritchard, B, Riat, HS, Ritchie, GRS, Ruffier, M, Schuster, M, Sobral, D, Tang, YA, Taylor, K, Trevanion, S, Vandrovcova, J, White, S, Wilson, M, Wilder, SP, Aken, BL, Birney, E, Cunningham, F, Dunham, I, Durbin, R, Fernández-Suarez, XM, Harrow, J, Herrero, J, Hubbard, TJP, Parker, A, Proctor, G, Spudich, G, Vogel, J, Yates, A, Zadissa, A & Searle, SMJ 2012, 'Ensembl 2012', Nucleic Acids Research, vol. 40, no. D1 (Database Issue), N/A, pp. D84-D90. https://doi.org/10.1093/nar/gkr991

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AU - Amode, M Ridwan

AU - Barrell, Daniel

AU - Beal, Kathryn

AU - Brent, Simon

AU - Carvalho-Silva, Denise

AU - Clapham, Peter

AU - Coates, Guy

AU - Fairley, Susan

AU - Fitzgerald, Stephen

AU - Gil, Laurent

AU - Gordon, Leo

AU - Hendrix, Maurice

AU - Hourlier, Thibaut

AU - Johnson, Nathan

AU - Kähäri, Andreas K

AU - Keefe, Damian

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AU - Kinsella, Rhoda

AU - Komorowska, Monika

AU - Koscielny, Gautier

AU - Kulesha, Eugene

AU - Larsson, Pontus

AU - Longden, Ian

AU - McLaren, William

AU - Muffato, Matthieu

AU - Overduin, Bert

AU - Pignatelli, Miguel

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AU - Riat, Harpreet Singh

AU - Ritchie, Graham R S

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AU - Sobral, Daniel

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AU - Taylor, Kieron

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AU - Wilder, Steven P

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AU - Cunningham, Fiona

AU - Dunham, Ian

AU - Durbin, Richard

AU - Fernández-Suarez, Xosé M

AU - Harrow, Jennifer

AU - Herrero, Javier

AU - Hubbard, Tim J P

AU - Parker, Anne

AU - Proctor, Glenn

AU - Spudich, Giulietta

AU - Vogel, Jan

AU - Yates, Andy

AU - Zadissa, Amonida

AU - Searle, Stephen M J

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AB - The Ensembl project (http://www.ensembl.org) provides genome resources for chordate genomes with a particular focus on human genome data as well as data for key model organisms such as mouse, rat and zebrafish. Five additional species were added in the last year including gibbon (Nomascus leucogenys) and Tasmanian devil (Sarcophilus harrisii) bringing the total number of supported species to 61 as of Ensembl release 64 (September 2011). Of these, 55 species appear on the main Ensembl website and six species are provided on the Ensembl preview site (Pre!Ensembl; http://pre.ensembl.org) with preliminary support. The past year has also seen improvements across the project.

KW - Animals

KW - Databases, Genetic

KW - Gene Expression Regulation

KW - Genetic Variation

KW - Genomics

KW - Humans

KW - Mice

KW - Molecular Sequence Annotation

KW - Rats

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DO - 10.1093/nar/gkr991

M3 - Article

C2 - 22086963

SN - 0305-1048

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SP - D84-D90

JO - Nucleic Acids Research

JF - Nucleic Acids Research

IS - D1 (Database Issue)

M1 - N/A

ER -

Ensembl 2012

Abstract

Keywords

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