Ensembl's 10th year

Paul Flicek; Bronwen L Aken; Benoit Ballester; Kathryn Beal; Eugene Bragin; Simon Brent; Yuan Chen; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Julio Fernandez-Banet; Leo Gordon; Stefan Gräf; Syed Haider; Martin Hammond; Kerstin Howe; Andrew Jenkinson; Nathan Johnson; Andreas Kähäri; Damian Keefe; Stephen Keenan; Rhoda Kinsella; Felix Kokocinski; Gautier Koscielny; Eugene Kulesha; Daniel Lawson; Ian Longden; Tim Massingham; William McLaren; Karine Megy; Bert Overduin; Bethan Pritchard; Daniel Rios; Magali Ruffier; Michael Schuster; Guy Slater; Damian Smedley; Giulietta Spudich; Y Amy Tang; Stephen Trevanion; Albert Vilella; Jan Vogel; Simon White; Steven P Wilder; Amonida Zadissa; Ewan Birney; Fiona Cunningham; Ian Dunham; Richard Durbin; Xosé M Fernández-Suarez; Javier Herrero; Tim J P Hubbard; Anne Parker; Glenn Proctor; James Smith; Stephen M J Searle

doi:10.1093/nar/gkp972

Ensembl's 10th year

Paul Flicek, Bronwen L Aken, Benoit Ballester, Kathryn Beal, Eugene Bragin, Simon Brent, Yuan Chen, Peter Clapham, Guy Coates, Susan Fairley, Stephen Fitzgerald, Julio Fernandez-Banet, Leo Gordon, Stefan Gräf, Syed Haider, Martin Hammond, Kerstin Howe, Andrew Jenkinson, Nathan Johnson, Andreas KähäriDamian Keefe, Stephen Keenan, Rhoda Kinsella, Felix Kokocinski, Gautier Koscielny, Eugene Kulesha, Daniel Lawson, Ian Longden, Tim Massingham, William McLaren, Karine Megy, Bert Overduin, Bethan Pritchard, Daniel Rios, Magali Ruffier, Michael Schuster, Guy Slater, Damian Smedley, Giulietta Spudich, Y Amy Tang, Stephen Trevanion, Albert Vilella, Jan Vogel, Simon White, Steven P Wilder, Amonida Zadissa, Ewan Birney, Fiona Cunningham, Ian Dunham, Richard Durbin, Xosé M Fernández-Suarez, Javier Herrero, Tim J P Hubbard, Anne Parker, Glenn Proctor, James Smith, Stephen M J Searle

Medical & Molecular Genetics

European Molecular Biology Laboratory Cambridge

Research output: Contribution to journal › Article › peer-review

247 Citations (Scopus)

Abstract

Ensembl (http://www.ensembl.org) integrates genomic information for a comprehensive set of chordate genomes with a particular focus on resources for human, mouse, rat, zebrafish and other high-value sequenced genomes. We provide complete gene annotations for all supported species in addition to specific resources that target genome variation, function and evolution. Ensembl data is accessible in a variety of formats including via our genome browser, API and BioMart. This year marks the tenth anniversary of Ensembl and in that time the project has grown with advances in genome technology. As of release 56 (September 2009), Ensembl supports 51 species including marmoset, pig, zebra finch, lizard, gorilla and wallaby, which were added in the past year. Major additions and improvements to Ensembl since our previous report include the incorporation of the human GRCh37 assembly, enhanced visualisation and data-mining options for the Ensembl regulatory features and continued development of our software infrastructure.

Original language	English
Article number	N/A
Pages (from-to)	D557-D562
Number of pages	6
Journal	Nucleic Acids Research
Volume	38
Issue number	suppl 1 (Database issue)
DOIs	https://doi.org/10.1093/nar/gkp972
Publication status	Published - Jan 2010

Keywords

Access to Information
Animals
Computational Biology
Databases, Genetic
Databases, Nucleic Acid
Databases, Protein
Genetic Variation
Genomics
Humans
Information Storage and Retrieval
Internet
Protein Structure, Tertiary
Software
Species Specificity

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10.1093/nar/gkp972

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Flicek, P., Aken, B. L., Ballester, B., Beal, K., Bragin, E., Brent, S., Chen, Y., Clapham, P., Coates, G., Fairley, S., Fitzgerald, S., Fernandez-Banet, J., Gordon, L., Gräf, S., Haider, S., Hammond, M., Howe, K., Jenkinson, A., Johnson, N., ... Searle, S. M. J. (2010). Ensembl's 10th year. Nucleic Acids Research, 38(suppl 1 (Database issue)), D557-D562. Article N/A. https://doi.org/10.1093/nar/gkp972

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abstract = "Ensembl (http://www.ensembl.org) integrates genomic information for a comprehensive set of chordate genomes with a particular focus on resources for human, mouse, rat, zebrafish and other high-value sequenced genomes. We provide complete gene annotations for all supported species in addition to specific resources that target genome variation, function and evolution. Ensembl data is accessible in a variety of formats including via our genome browser, API and BioMart. This year marks the tenth anniversary of Ensembl and in that time the project has grown with advances in genome technology. As of release 56 (September 2009), Ensembl supports 51 species including marmoset, pig, zebra finch, lizard, gorilla and wallaby, which were added in the past year. Major additions and improvements to Ensembl since our previous report include the incorporation of the human GRCh37 assembly, enhanced visualisation and data-mining options for the Ensembl regulatory features and continued development of our software infrastructure.",

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Flicek, P, Aken, BL, Ballester, B, Beal, K, Bragin, E, Brent, S, Chen, Y, Clapham, P, Coates, G, Fairley, S, Fitzgerald, S, Fernandez-Banet, J, Gordon, L, Gräf, S, Haider, S, Hammond, M, Howe, K, Jenkinson, A, Johnson, N, Kähäri, A, Keefe, D, Keenan, S, Kinsella, R, Kokocinski, F, Koscielny, G, Kulesha, E, Lawson, D, Longden, I, Massingham, T, McLaren, W, Megy, K, Overduin, B, Pritchard, B, Rios, D, Ruffier, M, Schuster, M, Slater, G, Smedley, D, Spudich, G, Tang, YA, Trevanion, S, Vilella, A, Vogel, J, White, S, Wilder, SP, Zadissa, A, Birney, E, Cunningham, F, Dunham, I, Durbin, R, Fernández-Suarez, XM, Herrero, J, Hubbard, TJP, Parker, A, Proctor, G, Smith, J & Searle, SMJ 2010, 'Ensembl's 10th year', Nucleic Acids Research, vol. 38, no. suppl 1 (Database issue), N/A, pp. D557-D562. https://doi.org/10.1093/nar/gkp972

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AU - Aken, Bronwen L

AU - Ballester, Benoit

AU - Beal, Kathryn

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AU - Coates, Guy

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AU - Fitzgerald, Stephen

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AU - Ruffier, Magali

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AU - Slater, Guy

AU - Smedley, Damian

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AU - Trevanion, Stephen

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AU - White, Simon

AU - Wilder, Steven P

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AU - Dunham, Ian

AU - Durbin, Richard

AU - Fernández-Suarez, Xosé M

AU - Herrero, Javier

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AU - Parker, Anne

AU - Proctor, Glenn

AU - Smith, James

AU - Searle, Stephen M J

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KW - Access to Information

KW - Animals

KW - Computational Biology

KW - Databases, Genetic

KW - Databases, Nucleic Acid

KW - Databases, Protein

KW - Genetic Variation

KW - Genomics

KW - Humans

KW - Information Storage and Retrieval

KW - Internet

KW - Protein Structure, Tertiary

KW - Software

KW - Species Specificity

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DO - 10.1093/nar/gkp972

M3 - Article

C2 - 19906699

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VL - 38

SP - D557-D562

JO - Nucleic Acids Research

JF - Nucleic Acids Research

IS - suppl 1 (Database issue)

M1 - N/A

ER -

Ensembl's 10th year

Abstract

Keywords

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