On the Use of Agents in a Bioinformatics Grid

L Moreau; S Miles; C Goble; M Greenwood; V Dialani; M Addis; N Alpdemir; R Cawley; D de Roure; J Ferris; R Gaizouskas; K Glover; C Greenhalgh; P Li; X Liu; M Lord; M Luck; D.M.T Oinn; N Paton; S Pettifer; M.V Radenkovic; A Roberts; A Robinson; T Rodden; M Senger; N Sharman; R Stevens; B Warboys; A Wipat; C Wroe

doi:10.1109/CCGRID.2003.1199429

On the Use of Agents in a Bioinformatics Grid

L Moreau, S Miles, C Goble, M Greenwood, V Dialani, M Addis, N Alpdemir, R Cawley, D de Roure, J Ferris, R Gaizouskas, K Glover, C Greenhalgh, P Li, X Liu, M Lord, M Luck, D.M.T Oinn, N Paton, S PettiferM.V Radenkovic, A Roberts, A Robinson, T Rodden, M Senger, N Sharman, R Stevens, B Warboys, A Wipat, C Wroe

Research output: Chapter in Book/Report/Conference proceeding › Conference paper

28 Citations (Scopus)

Abstract

My Grid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows through personalisation, notification of change and publication of experiments. In this paper, we describe the architecture of my Grid and how it will be used by the scientist. We then show how my Grid can benefit from agents technologies. We have identified three key uses of agent technologies in my Grid: user agents, able to customize and personalise data, agent communication languages offering a generic and portable communication medium, and negotiation allowing multiple distributed entities to reach service level agreements.

Original language	English
Title of host publication	3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, 2003. Proceedings. CCGrid 2003
Publisher	IEEE
Pages	653 - 660
Number of pages	9
ISBN (Print)	0-7695-1919-9
DOIs	https://doi.org/10.1109/CCGRID.2003.1199429
Publication status	Published - 2003
Event	IEEE/ACM CCGRID'2003 workshop on Agent Based Cluster and Grid Computing - Duration: 1 Jan 2003 → …

Conference

Conference	IEEE/ACM CCGRID'2003 workshop on Agent Based Cluster and Grid Computing
Period	1/01/2003 → …

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10.1109/CCGRID.2003.1199429

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Moreau, L., Miles, S., Goble, C., Greenwood, M., Dialani, V., Addis, M., Alpdemir, N., Cawley, R., de Roure, D., Ferris, J., Gaizouskas, R., Glover, K., Greenhalgh, C., Li, P., Liu, X., Lord, M., Luck, M., Oinn, D. M. T., Paton, N., ... Wroe, C. (2003). On the Use of Agents in a Bioinformatics Grid. In 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, 2003. Proceedings. CCGrid 2003 (pp. 653 - 660). IEEE. https://doi.org/10.1109/CCGRID.2003.1199429

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title = "On the Use of Agents in a Bioinformatics Grid",

abstract = "My Grid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows through personalisation, notification of change and publication of experiments. In this paper, we describe the architecture of my Grid and how it will be used by the scientist. We then show how my Grid can benefit from agents technologies. We have identified three key uses of agent technologies in my Grid: user agents, able to customize and personalise data, agent communication languages offering a generic and portable communication medium, and negotiation allowing multiple distributed entities to reach service level agreements.",

author = "L Moreau and S Miles and C Goble and M Greenwood and V Dialani and M Addis and N Alpdemir and R Cawley and {de Roure}, D and J Ferris and R Gaizouskas and K Glover and C Greenhalgh and P Li and X Liu and M Lord and M Luck and D.M.T Oinn and N Paton and S Pettifer and M.V Radenkovic and A Roberts and A Robinson and T Rodden and M Senger and N Sharman and R Stevens and B Warboys and A Wipat and C Wroe",

year = "2003",

doi = "10.1109/CCGRID.2003.1199429",

language = "English",

isbn = "0-7695-1919-9",

pages = "653 -- 660",

booktitle = "3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, 2003. Proceedings. CCGrid 2003",

publisher = "IEEE",

note = "IEEE/ACM CCGRID'2003 workshop on Agent Based Cluster and Grid Computing ; Conference date: 01-01-2003",

}

Moreau, L, Miles, S, Goble, C, Greenwood, M, Dialani, V, Addis, M, Alpdemir, N, Cawley, R, de Roure, D, Ferris, J, Gaizouskas, R, Glover, K, Greenhalgh, C, Li, P, Liu, X, Lord, M, Luck, M, Oinn, DMT, Paton, N, Pettifer, S, Radenkovic, MV, Roberts, A, Robinson, A, Rodden, T, Senger, M, Sharman, N, Stevens, R, Warboys, B, Wipat, A & Wroe, C 2003, On the Use of Agents in a Bioinformatics Grid. in 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, 2003. Proceedings. CCGrid 2003. IEEE, pp. 653 - 660, IEEE/ACM CCGRID'2003 workshop on Agent Based Cluster and Grid Computing, 1/01/2003. https://doi.org/10.1109/CCGRID.2003.1199429

TY - CHAP

T1 - On the Use of Agents in a Bioinformatics Grid

AU - Moreau, L

AU - Miles, S

AU - Goble, C

AU - Greenwood, M

AU - Dialani, V

AU - Addis, M

AU - Alpdemir, N

AU - Cawley, R

AU - de Roure, D

AU - Ferris, J

AU - Gaizouskas, R

AU - Glover, K

AU - Greenhalgh, C

AU - Li, P

AU - Liu, X

AU - Lord, M

AU - Luck, M

AU - Oinn, D.M.T

AU - Paton, N

AU - Pettifer, S

AU - Radenkovic, M.V

AU - Roberts, A

AU - Robinson, A

AU - Rodden, T

AU - Senger, M

AU - Sharman, N

AU - Stevens, R

AU - Warboys, B

AU - Wipat, A

AU - Wroe, C

PY - 2003

Y1 - 2003

N2 - My Grid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows through personalisation, notification of change and publication of experiments. In this paper, we describe the architecture of my Grid and how it will be used by the scientist. We then show how my Grid can benefit from agents technologies. We have identified three key uses of agent technologies in my Grid: user agents, able to customize and personalise data, agent communication languages offering a generic and portable communication medium, and negotiation allowing multiple distributed entities to reach service level agreements.

AB - My Grid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows through personalisation, notification of change and publication of experiments. In this paper, we describe the architecture of my Grid and how it will be used by the scientist. We then show how my Grid can benefit from agents technologies. We have identified three key uses of agent technologies in my Grid: user agents, able to customize and personalise data, agent communication languages offering a generic and portable communication medium, and negotiation allowing multiple distributed entities to reach service level agreements.

U2 - 10.1109/CCGRID.2003.1199429

DO - 10.1109/CCGRID.2003.1199429

M3 - Conference paper

SN - 0-7695-1919-9

SP - 653

EP - 660

BT - 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, 2003. Proceedings. CCGrid 2003

PB - IEEE

T2 - IEEE/ACM CCGRID'2003 workshop on Agent Based Cluster and Grid Computing

Y2 - 1 January 2003

ER -

On the Use of Agents in a Bioinformatics Grid

Abstract

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